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Running Nextflow Pipelines on Gridware Cluster Scheduler: An RNA Sequencing Example using Apptainer

Introduction In the landscape of computational biology, the ability to efficiently manage and execute complex analysis workflows is critical. Nextflow has emerged as a powerful tool for orchestrating such workflows, particularly in genomics. Its flexibility and scalability make it a go-to solution for researchers running intricate data pipelines. But how do you ensure these workflows…

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Efficiently Managing GPUs with Open Cluster Scheduler’s RSMAP Resource Type

(Image: AI-generated with PlaygroundAI/Stabile Diffusion XL) Open Cluster Scheduler has introduced a powerful and flexible resource type known as Resource Map (RSMAP), designed to manage and assign specific instances of resources like GPUs. Initially integrated into Univa Grid Engine Open Core, RSMAP is now also available in the latest version of Cluster Scheduler. Introduction Unlike…

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Open Cluster Scheduler: The Future of Open Source Workload Management

Dear Community, We are thrilled to announce that the source code repository for the Open Cluster Scheduler is now officially open-sourced and available at github.com/hpc-gridware/clusterscheduler. The Open Cluster Scheduler is the cutting-edge successor to renowned open-source workload management systems such as “Sun Grid Engine”, “Univa Grid Engine Open Core”, “Son of Grid Engine,” and others. With…

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